{
  "_id": "6a141defacfb0bcc41d3dd92",
  "Package": "TANDEM",
  "Type": "Package",
  "Title": "A Two-Stage Approach to Maximize Interpretability of Drug\nResponse Models Based on Multiple Molecular Data Types",
  "Version": "1.0.3",
  "Date": "2019-11-18",
  "Author": "Nanne Aben",
  "Maintainer": "Nanne Aben <nanne.aben@gmail.com>",
  "Description": "A two-stage regression method that can be used when\nvarious input data types are correlated, for example gene\nexpression and methylation in drug response prediction. In the\nfirst stage it uses the upstream features (such as methylation)\nto predict the response variable (such as drug response), and\nin the second stage it uses the downstream features (such as\ngene expression) to predict the residuals of the first stage.\nIn our manuscript (Aben et al., 2016,\n<doi:10.1093/bioinformatics/btw449>), we show that using TANDEM\nprevents the model from being dominated by gene expression and\nthat the features selected by TANDEM are more interpretable.",
  "License": "GPL-2",
  "LazyData": "TRUE",
  "RoxygenNote": "7.0.0",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-25 09:58:12 UTC",
    "User": "root"
  },
  "Repository": "https://nanne-aben.r-universe.dev",
  "Date/Publication": "2019-11-25 14:30:02 UTC",
  "RemoteUrl": "https://github.com/cran/TANDEM",
  "RemoteRef": "HEAD",
  "RemoteSha": "6b32438a5e349265992112f51cf75977d6f5851b",
  "MD5sum": "7dba81b065ebc7aa88a249a20a589478",
  "_user": "nanne-aben",
  "_type": "src",
  "_file": "TANDEM_1.0.3.tar.gz",
  "_fileid": "58d798513a150f83ee6650a7f33045b07c88ddd0abe4ea2e7132a572c6f778c8",
  "_filesize": 232324,
  "_sha256": "58d798513a150f83ee6650a7f33045b07c88ddd0abe4ea2e7132a572c6f778c8",
  "_created": "2026-05-25T09:58:12.000Z",
  "_published": "2026-05-25T10:01:19.913Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77692477459,
      "time": 117,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7195985457"
    },
    {
      "job": 77692477452,
      "time": 118,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195985721"
    },
    {
      "job": 77692477446,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7195982509"
    },
    {
      "job": 77692477491,
      "time": 116,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195985469"
    },
    {
      "job": 77692091482,
      "time": 177,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195955611"
    },
    {
      "job": 77692477426,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195981933"
    },
    {
      "job": 77692477544,
      "time": 68,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7195973527"
    },
    {
      "job": 77692477536,
      "time": 69,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7195973672"
    },
    {
      "job": 77692477538,
      "time": 86,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7195977960"
    }
  ],
  "_buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/TANDEM",
  "_commit": {
    "id": "6b32438a5e349265992112f51cf75977d6f5851b",
    "author": "Nanne Aben <nanne.aben@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.3\n",
    "time": 1574692202
  },
  "_maintainer": {
    "name": "Nanne Aben",
    "email": "nanne.aben@gmail.com",
    "login": "nanne-aben",
    "description": "",
    "uuid": 47976799
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "glmnet",
      "version": ">= 3.0",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "nanne-aben",
      "count": 7,
      "uuid": 47976799
    }
  ],
  "_userbio": {
    "uuid": 47976799,
    "type": "user",
    "name": "nanne-aben"
  },
  "_downloads": {
    "count": 188,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TANDEM"
  },
  "_mentions": 89,
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TANDEM.html",
    "manual.pdf"
  ],
  "_realowner": "nanne-aben",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.9.1",
      "date": "2016-06-08"
    },
    {
      "version": "0.9.2",
      "date": "2016-07-11"
    },
    {
      "version": "0.9.3",
      "date": "2016-07-13"
    },
    {
      "version": "1.0.0",
      "date": "2016-09-19"
    },
    {
      "version": "1.0.1",
      "date": "2017-04-07"
    },
    {
      "version": "1.0.2",
      "date": "2017-06-15"
    },
    {
      "version": "1.0.3",
      "date": "2019-11-25"
    }
  ],
  "_exports": [
    "nested.cv",
    "relative.contributions",
    "tandem"
  ],
  "_datasets": [
    {
      "name": "example_data",
      "title": "A small artificial data set",
      "object": "example_data",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "coef.tandem",
      "title": "Returns the regression coefficients from a TANDEM fit",
      "topics": [
        "coef.tandem"
      ]
    },
    {
      "page": "example_data",
      "title": "A small artificial data set",
      "topics": [
        "example_data"
      ]
    },
    {
      "page": "nested.cv",
      "title": "Estimating predictive performance via nested cross-validation",
      "topics": [
        "nested.cv"
      ]
    },
    {
      "page": "predict.tandem",
      "title": "Creates a prediction using a tandem-object",
      "topics": [
        "predict.tandem"
      ]
    },
    {
      "page": "relative.contributions",
      "title": "Determine the relative contribution per data type",
      "topics": [
        "relative.contributions"
      ]
    },
    {
      "page": "tandem",
      "title": "Fits a TANDEM model by performing a two-stage regression",
      "topics": [
        "tandem"
      ]
    }
  ],
  "_readme": "https://github.com/cran/TANDEM/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "foreach",
    "glmnet",
    "iterators",
    "lattice",
    "Matrix",
    "Rcpp",
    "RcppEigen",
    "shape",
    "survival"
  ],
  "_vignettes": [
    {
      "source": "my-vignette.Rmd",
      "filename": "my-vignette.html",
      "title": "TANDEM",
      "author": "Nanne Aben",
      "engine": "knitr::rmarkdown",
      "headings": [
        "References"
      ],
      "created": "2016-06-08 11:45:56",
      "modified": "2017-04-07 11:33:36",
      "commits": 3
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "tandem",
  "_universes": [
    "nanne-aben"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-05-25T10:00:10.000Z",
      "distro": "noble",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "9b4f53a9914bf6eb6de0e433700a22b25179975c5e3865cfb56e95174a8cd127",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-05-25T10:00:11.000Z",
      "distro": "noble",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "8ac73948944226f3b043b9ec1f7943f022957b487d308e4f07039dddfac59f49",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-05-25T10:00:02.000Z",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "85ab049f87c86996cff850b95070751e6cccaa47a761e50e22eebb7554e7bdbd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-05-25T10:00:11.000Z",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "b7d5d9605e1163f6bccfee67067f16d2976989b698c26a70895e54ad0291bba7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-05-25T10:00:10.000Z",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "e7e0407d11ae15238760bd6933f776436be549e3215864b93843c6ea3c29b7b7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-05-25T09:59:25.000Z",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "30fbc00c831c5d9f95d6eca1a0a936a445353ada62466023bddf42ee17fa7bd3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-05-25T09:59:21.000Z",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "9dd6cfb8b8a2a44ee5dad0de29212ab64db8f268a48d2712965778a476bc1b33",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-05-25T09:59:34.000Z",
      "commit": "6b32438a5e349265992112f51cf75977d6f5851b",
      "fileid": "ac52f9d714646679ffc247bd854177df843f2340d2537382eec9a60d622685db",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nanne-aben/actions/runs/26394565414"
    }
  ]
}